adjusttext
bioservices>=1.10.0
brokenaxes
bx-python
click>=8.1.0
colorlog>=3.1.0
colormap
cookiecutter
cython
docutils
easydev>=0.11.1
gseapy>=0.13
itolapi
lxml
matplotlib
matplotlib-venn
mock
multiqc<=1.11
pandas>=0.22
plotly
psutil
pykwalify
vcfpy
pysam>=0.16
ruamel.yaml>=0.16.0
snakemake>=7.16
scikit-learn
scipy
seaborn
statsmodels
tqdm
xlrd
UpSetPlot

[doc]
sphinx>=3
sphinx_rtd_theme
sphinx_gallery
sequana_sphinxext

[pipelines]
sequana_quality_control
sequana_fastqc
sequana_rnaseq
sequana_variant_calling
sequana_demultiplex
sequana_coverage
sequana_denovo
sequana_mapper

[testing]
pytest
pytest-cov
pytest-xdist
pytest-mock
pytest-timeout
pytest-runner
coveralls
