MANIFEST.in
README.md
setup.py
openpd/__init__.py
openpd/ensemble.py
openpd/forceEncoder.py
openpd/runTest.py
openpd/simulation.py
openpd.egg-info/PKG-INFO
openpd.egg-info/SOURCES.txt
openpd.egg-info/dependency_links.txt
openpd.egg-info/requires.txt
openpd.egg-info/top_level.txt
openpd/core/__init__.py
openpd/core/atom.py
openpd/core/chain.py
openpd/core/peptide.py
openpd/core/system.py
openpd/core/topology.py
openpd/dumper/__init__.py
openpd/dumper/pdbDumper.py
openpd/dumper/snapshot.py
openpd/force/__init__.py
openpd/force/force.py
openpd/force/pdffNonBondedForce.py
openpd/force/pdffTorsionForce.py
openpd/force/rigidBondForce.py
openpd/integrator/__init__.py
openpd/integrator/brownianIntegrator.py
openpd/integrator/mcmcIntegrator.py
openpd/loader/__init__.py
openpd/loader/loader.py
openpd/loader/pdbLoader.py
openpd/loader/sequenceLoader.py
openpd/tests/__init__.py
openpd/tests/conftest.py
openpd/tests/test_atom.py
openpd/tests/test_baseDimension.py
openpd/tests/test_chain.py
openpd/tests/test_ensemble.py
openpd/tests/test_force.py
openpd/tests/test_forceEncoder.py
openpd/tests/test_geometry.py
openpd/tests/test_judgement.py
openpd/tests/test_loader.py
openpd/tests/test_locate.py
openpd/tests/test_pdbLoader.py
openpd/tests/test_pdffNonBondedForce.py
openpd/tests/test_pdffTorsionForce.py
openpd/tests/test_peptide.py
openpd/tests/test_quantity.py
openpd/tests/test_rigidBondForce.py
openpd/tests/test_sequenceLoader.py
openpd/tests/test_system.py
openpd/tests/test_topology.py
openpd/tests/test_unique.py
openpd/tests/test_unit.py
openpd/tests/test_unitDefinition.py
openpd/unit/__init__.py
openpd/unit/baseDimension.py
openpd/unit/quantity.py
openpd/unit/unit.py
openpd/unit/unitDefinition.py
openpd/utils/__init__.py
openpd/utils/geometry.py
openpd/utils/judgement.py
openpd/utils/locate.py
openpd/utils/unique.py
openpd/visualizer/__init__.py
openpd/visualizer/systemVisualizer.py