Metadata-Version: 1.2
Name: sequana
Version: 0.8.6
Summary: A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis
Home-page: http://github.com/sequana/sequana
Author: Thomas Cokelaer
Author-email: thomas.cokelaer@pasteur.fr
Maintainer: Thomas Cokelaer
Maintainer-email: thomas.cokelaer@pasteur.fr
License: new BSD
Download-URL: https://github.com/sequana/sequana/archive/0.8.6.tar.gz
Description: SEQUANA
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        .. image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)
           :target: http://bioconda.github.io/recipes/sequana/README.html
        
        .. image:: https://badge.fury.io/py/sequana.svg
            :target: https://pypi.python.org/pypi/sequana
        
        .. image:: https://travis-ci.org/sequana/sequana.svg?branch=master
            :target: https://travis-ci.org/sequana/sequana
        
        .. image:: https://coveralls.io/repos/github/sequana/sequana/badge.svg?branch=master
            :target: https://coveralls.io/github/sequana/sequana?branch=master 
        
        .. image:: http://readthedocs.org/projects/sequana/badge/?version=master
            :target: http://sequana.readthedocs.org/en/latest/?badge=master
            :alt: Documentation Status
        
        .. image:: http://joss.theoj.org/papers/10.21105/joss.00352/status.svg
           :target: http://joss.theoj.org/papers/10.21105/joss.00352
           :alt: JOSS (journal of open source software) DOI
        
        
        :Python version: 
            3.6, 3.7.3 (below for now)
        :Online documentation:
            `On readthedocs <http://sequana.readthedocs.org/>`_
        :Issues and bug reports:
            `On github <https://github.com/sequana/sequana/issues>`_
        :How to cite: 
            For Sequana in general including the pipelines, please use 
            the `JOSS DOI (10.21105/joss.00352) <http://www.doi2bib.org/#/doi/10.21105/joss.00352>`_
        
            For the **genome coverage** tool (sequana_coverage):  Dimitri Desvillechabrol,
            Christiane Bouchier, Sean Kennedy, Thomas Cokelaer
            http://biorxiv.org/content/early/2016/12/08/092478
        
            For **Sequanix**: Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen,
            Christiane Bouchier, Jacques van Helden, Sean Kennedy, Thomas Cokelaer.
            Sequanix: A Dynamic Graphical Interface for Snakemake Workflows 
            Bioinformatics, bty034, https://doi.org/10.1093/bioinformatics/bty034
            Also available on bioRxiv (DOI: https://doi.org/10.1101/162701)
        
        
        **Sequana** includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy, transcriptomics. We also ship **Sequanix**, a graphical user interface for Snakemake pipelines. 
        
        **Please see the** `documentation <http://sequana.readthedocs.org>`_ for an
        up-to-date status and documentation.
        
        
Keywords: NGS,snakemake
Platform: Linux
Platform: Unix
Platform: MacOsX
Platform: Windows
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Physics
