=== 1kg-low-coverage / *.mapped.ILLUMINA.bwa.GBR.low_coverage.20120522 ===

These files are part of the 1000 genomes low coverage reads.
They were downloaded from ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data/[sample id]/alignment
and processed using the bam2bam script in the scripts directory.

=== unmapped / chr17.1-250.bam ===

This BAM has two qualities:
- 14 mapped reads plus 1 unmapped read at the end
- has no query_qualities for some reads

See issues #498 and #492

=== wgBam / wgEncode*.bam ===

Files in this directory (wgBam) are taken from here:

http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwRepliSeq/

And shortened / converted with tools in the scripts/ directory.
