LICENSE
MANIFEST.in
README.rst
requirements.txt
requirements_dev.txt
setup.cfg
setup.py
pynextgen/__init__.py
pynextgen/alternative_splicing.py
pynextgen/basics_bam.py
pynextgen/basics_bed.py
pynextgen/basics_biomart.py
pynextgen/basics_blast.py
pynextgen/basics_counts.py
pynextgen/basics_ensembl.py
pynextgen/basics_entrez.py
pynextgen/basics_fasta.py
pynextgen/basics_fastq.py
pynextgen/basics_go.py
pynextgen/basics_gtf.py
pynextgen/basics_nuc_seq.py
pynextgen/basics_seq.py
pynextgen/basics_sra.py
pynextgen/bed.py
pynextgen/clusters_from_bam.py
pynextgen/clusters_from_blast.py
pynextgen/coverage_comparisons.py
pynextgen/databases.py
pynextgen/differential_regulation.py
pynextgen/divtrans.py
pynextgen/identify_my_gene.py
pynextgen/logging_config.py
pynextgen/majiq1_run.py
pynextgen/majiq_run.py
pynextgen/metagene.py
pynextgen/output_plotting.py
pynextgen/pyNextGen.py
pynextgen/ribo_profiling.py
pynextgen/run_ipynb_params.py
pynextgen/serial_plotter.py
pynextgen/snake_generator.py
pynextgen/utils.py
pynextgen/version.py
pynextgen.egg-info/PKG-INFO
pynextgen.egg-info/SOURCES.txt
pynextgen.egg-info/dependency_links.txt
pynextgen.egg-info/entry_points.txt
pynextgen.egg-info/requires.txt
pynextgen.egg-info/top_level.txt
pynextgen/scripts/__init__.py
pynextgen/scripts/clean_featurecounts.py
pynextgen/scripts/divergent_transcription.py
test/test_basics_fasta.py
test/test_divergent_transcription.py
test/test_utils.py