CONTRIBUTING.rst
HISTORY.rst
LICENSE.txt
MANIFEST.in
README.rst
setup.cfg
setup.py
versioneer.py
PyHDX.egg-info/PKG-INFO
PyHDX.egg-info/SOURCES.txt
PyHDX.egg-info/dependency_links.txt
PyHDX.egg-info/entry_points.txt
PyHDX.egg-info/requires.txt
PyHDX.egg-info/top_level.txt
docs/Makefile
docs/authors.rst
docs/citing.rst
docs/conf.py
docs/contributing.rst
docs/examples.rst
docs/fitting.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/introduction.rst
docs/make.bat
docs/modules.rst
docs/web_app.rst
docs/web_app_autodoc.rst
docs/bk/conf.py
docs/bk/index.rst
docs/figures/Blocks_original.png
docs/figures/Blocks_reduced.png
docs/figures/overfitting.png
pyhdx/__init__.py
pyhdx/_version.py
pyhdx/alignment.py
pyhdx/batch_processing.py
pyhdx/cli.py
pyhdx/config.ini
pyhdx/config.py
pyhdx/fileIO.py
pyhdx/fit_models.py
pyhdx/fitting.py
pyhdx/fitting_torch.py
pyhdx/local_cluster.py
pyhdx/models.py
pyhdx/output.py
pyhdx/plot.py
pyhdx/support.py
pyhdx/tol_colors.py
pyhdx/web/__init__.py
pyhdx/web/apps.py
pyhdx/web/base.py
pyhdx/web/cache.py
pyhdx/web/constructor.py
pyhdx/web/controllers.py
pyhdx/web/jinja_base.html
pyhdx/web/log.py
pyhdx/web/main_controllers.py
pyhdx/web/opts.py
pyhdx/web/pane.py
pyhdx/web/paramdoc.py
pyhdx/web/serve.py
pyhdx/web/sources.py
pyhdx/web/template.py
pyhdx/web/theme.py
pyhdx/web/tools.py
pyhdx/web/transforms.py
pyhdx/web/utils.py
pyhdx/web/views.py
pyhdx/web/widgets.py
pyhdx/web/apps/pyhdx_app.yaml
pyhdx/web/apps/rfu_app.yaml
pyhdx/web/static/index.html
pyhdx/web/static/pyhdx_header.png
pyhdx/web/static/extendedgoldentemplate/default.css
tasks/__init__.py
tasks/test.py
tests/check_test_fit_result.py
tests/gen_docs_example_result.py
tests/generate_test_fit_results.py
tests/test_batchprocessing.py
tests/test_config.py
tests/test_fileIO.py
tests/test_fitting.py
tests/test_gui.py
tests/test_models.py
tests/test_support.py
tests/test_templates.py
tests/test_data/input/data_states.yaml
tests/test_data/input/data_states_deltas.yaml
tests/test_data/input/data_states_red.yaml
tests/test_data/input/ecSecB_apo.csv
tests/test_data/input/ecSecB_apo_red.csv
tests/test_data/input/ecSecB_dimer.csv
tests/test_data/input/ecSecB_dimer_deltaC.csv
tests/test_data/input/ecSecB_dimer_deltaN.csv
tests/test_data/input/ecSecB_dimer_red.csv
tests/test_data/input/fit_settings.yaml
tests/test_data/input/jobfile.yaml
tests/test_data/output/ecSecB_batch.csv
tests/test_data/output/ecSecB_batch.txt
tests/test_data/output/ecSecB_batch_aligned.csv
tests/test_data/output/ecSecB_batch_aligned.txt
tests/test_data/output/ecSecB_batch_loss.csv
tests/test_data/output/ecSecB_batch_peptide_mse.csv
tests/test_data/output/ecSecB_batch_residue_mse.csv
tests/test_data/output/ecSecB_guess.csv
tests/test_data/output/ecSecB_guess.txt
tests/test_data/output/ecSecB_info.csv
tests/test_data/output/ecSecB_info.txt
tests/test_data/output/ecSecB_rates.txt
tests/test_data/output/ecSecB_reduced_guess.csv
tests/test_data/output/ecSecB_reduced_guess.txt
tests/test_data/output/ecSecB_rfu_per_exposure.csv
tests/test_data/output/ecSecB_rfu_per_exposure.txt
tests/test_data/output/ecSecB_torch_fit.csv
tests/test_data/output/ecSecB_torch_fit.txt
tests/test_data/output/ecSecB_torch_fit_epochs_20000.csv
tests/test_data/output/ecSecB_torch_fit_epochs_20000.txt
tests/test_data/output/attributes/X.txt
tests/test_data/output/attributes/Z.txt
tests/test_data/output/ecsecb_delta_batch/HDXMeasurements.csv
tests/test_data/output/ecsecb_delta_batch/fit_result.csv
tests/test_data/output/ecsecb_delta_batch/fit_result.txt
tests/test_data/output/ecsecb_delta_batch/log.txt
tests/test_data/output/ecsecb_delta_batch/losses.csv
tests/test_data/output/ecsecb_delta_batch/losses.txt
tests/test_data/output/ecsecb_reduced/HDXMeasurement.csv
tests/test_data/output/ecsecb_reduced/fit_result.csv
tests/test_data/output/ecsecb_reduced/fit_result.txt
tests/test_data/output/ecsecb_reduced/log.txt
tests/test_data/output/ecsecb_reduced/losses.csv
tests/test_data/output/ecsecb_reduced/losses.txt
tests/test_data/output/ecsecb_reduced_batch/HDXMeasurements.csv
tests/test_data/output/ecsecb_reduced_batch/fit_result.csv
tests/test_data/output/ecsecb_reduced_batch/fit_result.txt
tests/test_data/output/ecsecb_reduced_batch/log.txt
tests/test_data/output/ecsecb_reduced_batch/losses.csv
tests/test_data/output/ecsecb_reduced_batch/losses.txt
tests/test_data/output/gui/dG_fits.csv
tests/test_data/output/gui/d_calc.csv
tests/test_data/output/gui/loss.csv
tests/test_data/output/gui/peptide_mse.csv
tests/test_data/output/gui/peptides.csv
tests/test_data/output/gui/rates.csv
tests/test_data/output/gui/rfu_residues.csv