Metadata-Version: 2.1
Name: c4counter
Version: 0.0.2
Summary: finds the number and types of complement component 4 (C4) genes in a fasta file. minimap2 is used for mapping
Home-page: https://github.com/irunonayran/c4counter.git
Author: Stephan Scholz
Author-email: stephan.scholz@hhu.de
Project-URL: Bug Tracker, https://github.com/irunonayran/c4counter/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE

# c4counter
This skript takes fasta files containing human HLA regions and returns the number and types of C4 genes (C4A / C4B, HERV / no HERV). In addition, a simple graphical representation in svg format is generated (name: c4.svg)

## Dependencies
minimap2 is used for mapping

## Installation
### pip

`pip install c4counter`

please make sure you have minimap2 installed
### bioconda

`conda install c4counter`

conda will install minimap2 for you
