Metadata-Version: 2.1
Name: variant-tools
Version: 3.1.3
Summary: Variant tools: an integrated annotation and analysis package for next-generation sequencing data
Home-page: http://varianttools.sourceforge.net
Author: Bo Peng
Author-email: bpeng@mdanderson.org
Maintainer: Bo Peng
Maintainer-email: varianttools-devel@lists.sourceforge.net
License: GPL3
Description: [![PyPI version](https://badge.fury.io/py/variant-tools.svg)](https://badge.fury.io/py/variant-tools)
        
        # Variant Tools
        
        A command line tool for the manipulation, annotation, and analysis of genetic variants
        from next-generation sequencing studies.
        
        # Installation
        
        If you are using a conda environment, you can install variant tools with command
        
        ```
        conda install variant_tools -c bioconda -c conda-forge
        ```
        Option `-c conda-forge` is required to enforce the use of `conda-forge` version of dependencies (e.g. `boost-cpp`) over their counterpoarts in the base channel.
        
        Otherwise, you can try to install it through `pip`
        
        ```
        pip install variant_tools
        ```
        
        You will need to install
        
        * `libboost`
        * `gsl`
        * `numpy`
        * `Cython`
        * `hdf5`
        * `blosc`
        * A C++ compiler such as `gcc`
        
        which, in a conda environment, could be installed with command
        
        ```
        conda install -c conda-forge boost-cpp gsl numpy cython blosc hdf5
        ```
        
        This method can be used if you download or clone the latest version
        of variant tools from this repository.
        
        # Documentation
        
        Please refer to [Variant Tools documentation](https://vatlab.github.io/vat-docs/) for details.
        
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License (GPL)
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Programming Language :: C++
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
