CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
bionumpy/__init__.py
bionumpy/alignments.py
bionumpy/bedgraph.py
bionumpy/bionumpy.py
bionumpy/bnpdataclass.py
bionumpy/cigar.py
bionumpy/cli.py
bionumpy/code_nodes.py
bionumpy/counter.py
bionumpy/datatypes.py
bionumpy/dna.py
bionumpy/encoded_array.py
bionumpy/groupby.py
bionumpy/gtf.py
bionumpy/intervals.py
bionumpy/jaspar.py
bionumpy/kmers.py
bionumpy/lookup.py
bionumpy/minimizers.py
bionumpy/mutation_signature.py
bionumpy/position_weight_matrix.py
bionumpy/rollable.py
bionumpy/string_matcher.py
bionumpy/testing.py
bionumpy/translate.py
bionumpy/util.py
bionumpy/variants.py
bionumpy/vcf.py
bionumpy.egg-info/PKG-INFO
bionumpy.egg-info/SOURCES.txt
bionumpy.egg-info/dependency_links.txt
bionumpy.egg-info/entry_points.txt
bionumpy.egg-info/not-zip-safe
bionumpy.egg-info/requires.txt
bionumpy.egg-info/top_level.txt
bionumpy/cupy_compatible/__init__.py
bionumpy/cupy_compatible/file_buffers.py
bionumpy/cupy_compatible/parser.py
bionumpy/cupy_compatible/sequences.py
bionumpy/encodings/__init__.py
bionumpy/encodings/_legacy_encodings.py
bionumpy/encodings/alphabet_encoding.py
bionumpy/encodings/base_encoding.py
bionumpy/io/__init__.py
bionumpy/io/bam.py
bionumpy/io/delimited_buffers.py
bionumpy/io/file_buffers.py
bionumpy/io/files.py
bionumpy/io/gfa.py
bionumpy/io/indexed_fasta.py
bionumpy/io/matrix_dump.py
bionumpy/io/multiline_buffer.py
bionumpy/io/parser.py
bionumpy/io/strops.py
bionumpy/streams/__init__.py
bionumpy/streams/decorators.py
bionumpy/streams/grouped.py
bionumpy/streams/multistream.py
bionumpy/streams/reductions.py
bionumpy/streams/stream.py
docs/_static/file.png
docs/_static/minus.png
docs/_static/plus.png
tests/__init__.py
tests/buffers.py
tests/gfa_test.py
tests/test_bam.py
tests/test_bionumpy.py
tests/test_chromosome_provider.py
tests/test_delimited_buffers.py
tests/test_encoded_array.py
tests/test_groupby.py
tests/test_integration.py
tests/test_intervals.py
tests/test_io.py
tests/test_kmer.py
tests/test_minimizers.py
tests/test_multistream.py
tests/test_npdataclassstream.py
tests/test_parsers.py
tests/test_pileup.py
tests/test_position_weight_matrix.py
tests/test_rollable.py
tests/test_seqeunces.py
tests/test_streambroadcast.py
tests/test_string_matcher.py
tests/test_strops.py
tests/test_translate.py
tests/test_util.py
tests/test_vcf.py
tests/property_tests/__init__.py
tests/property_tests/strategies.py
tests/property_tests/test_delimited_buffers.py
tests/property_tests/test_encodings.py
tests/property_tests/test_strops.py