Metadata-Version: 2.1
Name: wasp_map
Version: 0.3.1
Summary: Utilites for the mapping pipeline from WASP
Home-page: https://github.com/anthony-aylward/wasp_map.git
Author: Anthony Aylward
Author-email: aaylward@eng.ucsd.edu
License: UNKNOWN
Description: # wasp_map
        Utilites for the mapping pipeline from [WASP](https://github.com/bmvdgeijn/WASP)
        
        ## Installation
        
        **Step 0 (optional):** If you wish to specify the locations of the Anaconda3
        and/or WASP installations, you can do so through the environment variables
        `WASP_MAP_ANACONDA_DIR` and `WASP_MAP_DIR`. For example, you could append this
        to your `.bash_profile`:
        ```sh
        export WASP_MAP_ANACONDA_DIR=~/anaconda3
        export WASP_MAP_DIR=~/WASP
        ```
        
        If these environment variables point to already-existing installations of
        Anaconda3 and WASP, respectively, then you can skip step 2 (running
        `wasp_map-download`).
        
        If you also set environment variable `LD_LIBRARY_PATH` appropriately, you can
        skip step 3 (running `wasp_map-set-ldlib`). For example:
        
        ```sh
        export WASP_MAP_ANACONDA_DIR=~/anaconda3
        export WASP_MAP_DIR=~/WASP
        export LD_LIBRARY_PATH=${WASP_MAP_ANACONDA_DIR}/lib:$LD_LIBRARY_PATH
        ```
        
        **Step 1:** install the python package via `pip3`:
        ```sh
        pip3 install wasp_map
        ```
        or
        ```sh
        pip3 install --user wasp_map
        ```
        
        **Step 2:** Once the python package is installed, run
        ```sh
        wasp_map-download
        ```
        and follow the prompts. Anaconda3 and/or WASP will be installed, if necessary.
        
        **Step 3:** Next, run
        ```sh
        wasp_map-set-ldlib
        ```
        and follow the instruction. It will be something like:
        ```
        Run the following `export` command, or append it to your .bashrc, .profile, or .bash_profile:
        export LD_LIBRARY_PATH=/home/aaylward/.local/lib/python3.6/site-packages/wasp_map/anaconda3/lib:$LD_LIBRARY_PATH
        ```
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Description-Content-Type: text/markdown
