.gitignore
README.md
application-flydra-h5.sharedmimeinfo
flydra-plot-timeseries-2d-3d.mime
flydra_fastfinder_help.c
flydra_fastfinder_help.pyx
pyproject.toml
requirements.txt
run_tests.sh
setup.cfg
setup.py
stdeb.cfg
flydra_analysis/__init__.py
flydra_analysis/generate_fake_calibration.py
flydra_analysis/image_compare.py
flydra_analysis/kalmanize.py
flydra_analysis/mpl_markersize.py
flydra_analysis/offline_data_save.py
flydra_analysis/talign.py
flydra_analysis/test_commands.py
flydra_analysis/test_geom.py
flydra_analysis/test_reconstruction.py
flydra_analysis/version.py
flydra_analysis.egg-info/PKG-INFO
flydra_analysis.egg-info/SOURCES.txt
flydra_analysis.egg-info/dependency_links.txt
flydra_analysis.egg-info/entry_points.txt
flydra_analysis.egg-info/top_level.txt
flydra_analysis/a2/Makefile.kalmanize
flydra_analysis/a2/__init__.py
flydra_analysis/a2/aggdraw_coord_shifter.py
flydra_analysis/a2/analysis_options.py
flydra_analysis/a2/auto_discover_movies.py
flydra_analysis/a2/auto_discover_ufmfs.py
flydra_analysis/a2/benu.py
flydra_analysis/a2/benu_colormaps.py
flydra_analysis/a2/calculate_reprojection_errors.py
flydra_analysis/a2/calculate_skipped_frames.py
flydra_analysis/a2/calibration_align_gui.py
flydra_analysis/a2/calibration_to_xml.py
flydra_analysis/a2/check_clock_sync.py
flydra_analysis/a2/check_frame_skip.py
flydra_analysis/a2/check_mainbrain_h5_contiguity.py
flydra_analysis/a2/conditions.py
flydra_analysis/a2/conditions2.py
flydra_analysis/a2/conditions_draw.py
flydra_analysis/a2/core_analysis.py
flydra_analysis/a2/data2smoothed.py
flydra_analysis/a2/densities.py
flydra_analysis/a2/experiment_layout.py
flydra_analysis/a2/find_equiv_obj_id.py
flydra_analysis/a2/find_long_trajectories.py
flydra_analysis/a2/flydra_images_export.py
flydra_analysis/a2/flydra_scons.py
flydra_analysis/a2/flydra_textlog2csv.py
flydra_analysis/a2/flypos.py
flydra_analysis/a2/get_2D_image_latency.py
flydra_analysis/a2/get_2D_image_latency_plot.py
flydra_analysis/a2/get_clock_sync.py
flydra_analysis/a2/h5_info.py
flydra_analysis/a2/h5_shorten.py
flydra_analysis/a2/image_based_orientation.py
flydra_analysis/a2/kdmovie_saver.py
flydra_analysis/a2/kdmovie_saver_default_path.kmp
flydra_analysis/a2/kdviewer.py
flydra_analysis/a2/lsprofcalltree.py
flydra_analysis/a2/misc.py
flydra_analysis/a2/missing_value_error.py
flydra_analysis/a2/montage_ufmfs.py
flydra_analysis/a2/orientation_ekf_fitter.py
flydra_analysis/a2/orientation_ekf_plot.py
flydra_analysis/a2/overlay_kalman_movie.py
flydra_analysis/a2/plot_calibration_input.py
flydra_analysis/a2/plot_camera_positions.py
flydra_analysis/a2/plot_kalman_2d.py
flydra_analysis/a2/plot_skipped_frames.py
flydra_analysis/a2/plot_summary.py
flydra_analysis/a2/plot_timeseries.py
flydra_analysis/a2/plot_timeseries_2d_3d.py
flydra_analysis/a2/plot_top_view.py
flydra_analysis/a2/pos_ori2fu.py
flydra_analysis/a2/print_kalmanize_makefile_location.py
flydra_analysis/a2/print_reprojection_error.py
flydra_analysis/a2/ransac.py
flydra_analysis/a2/retrack_movies.py
flydra_analysis/a2/retrack_reuse_data_association.py
flydra_analysis/a2/revert_schema12_to_schema11.py
flydra_analysis/a2/rosbag2flydrah5.py
flydra_analysis/a2/sample_bowl.xml
flydra_analysis/a2/sample_calibration.xml
flydra_analysis/a2/sample_calibration_water.xml
flydra_analysis/a2/sample_datafile-v0.4.28.h5
flydra_analysis/a2/sample_datafile-v0.4.28.h5.retracked.h5
flydra_analysis/a2/sample_datafile.h5.spreadh5
flydra_analysis/a2/sample_kalman_trajectories.h5
flydra_analysis/a2/sample_one_meter_cylinder_arena.xml
flydra_analysis/a2/sample_stim_cubic_arena.xml
flydra_analysis/a2/save_movies_overlay.py
flydra_analysis/a2/stim_plugins.py
flydra_analysis/a2/stimulus_positions.py
flydra_analysis/a2/tables_tools.py
flydra_analysis/a2/trajectory_filtering.py
flydra_analysis/a2/ufmf_tools.py
flydra_analysis/a2/utils.py
flydra_analysis/a2/water_surface_align.py
flydra_analysis/a2/xml_stimulus.py
flydra_analysis/analysis/PQmath.py
flydra_analysis/analysis/__init__.py
flydra_analysis/analysis/caching_movie_opener.py
flydra_analysis/analysis/calc_forces.py
flydra_analysis/analysis/cam_params_play.py
flydra_analysis/analysis/circstats.py
flydra_analysis/analysis/copy_data_files.sh
flydra_analysis/analysis/copy_data_files_local.sh
flydra_analysis/analysis/create_movie.sh
flydra_analysis/analysis/flydra_analysis_convert_to_mat.py
flydra_analysis/analysis/flydra_analysis_filter_kalman_data.py
flydra_analysis/analysis/flydra_analysis_generate_recalibration.py
flydra_analysis/analysis/flydra_analysis_plot_clock_drift.py
flydra_analysis/analysis/flydra_analysis_plot_kalman_2d_histogram.py
flydra_analysis/analysis/flydra_analysis_print_camera_summary.py
flydra_analysis/analysis/flydra_convert_table_add_point_id.py
flydra_analysis/analysis/hzgeom.py
flydra_analysis/analysis/move_data_files_local.sh
flydra_analysis/analysis/pqmath_angular_velocity_quaternion_play.py
flydra_analysis/analysis/reconstruct_orientation.py
flydra_analysis/analysis/result_utils.py
flydra_analysis/analysis/save_as_flydra_hdf5.py
flydra_analysis/analysis/setup_analysis_dir.sh
flydra_analysis/analysis/smdfile.py
flydra_analysis/analysis/smooth_position.m
flydra_analysis/analysis/smooth_position_micro_demo.py
flydra_analysis/analysis/test_smooth.m
flydra_analysis/analysis/test_smooth_orientation.py
flydra_analysis/autogenerated/data2smoothed.mat
flydra_analysis/autogenerated/datafile2d.spreadh5
flydra_analysis/autogenerated/kalmanized.h5
flydra_analysis/autogenerated/mpl_markersize.png
flydra_analysis/autogenerated/plot_kalman_2d.png
flydra_analysis/autogenerated/plot_timeseries_2d.png
flydra_analysis/autogenerated/plot_timeseries_2d_3d.png
flydra_analysis/autogenerated/plot_timeseries_2d_with_spread.png
tests/test_calculate_reprojection_errors.py
tests/test_calibration_realignment.py
tests/test_export_flydra_hdf5.py
tests/test_previously_failing.py
tests/test_pymvg.py
tests/test_reconstruct.py
tests/test_result_utils.py
tests/sample_calibration/Cst.dat
tests/sample_calibration/Pmatrices.dat
tests/sample_calibration/Pst.dat
tests/sample_calibration/Res.dat
tests/sample_calibration/basename1.cal
tests/sample_calibration/basename1.rad
tests/sample_calibration/basename2.cal
tests/sample_calibration/basename2.rad
tests/sample_calibration/basename3.cal
tests/sample_calibration/basename3.rad
tests/sample_calibration/basename4.cal
tests/sample_calibration/basename4.rad
tests/sample_calibration/basename5.cal
tests/sample_calibration/basename5.rad
tests/sample_calibration/calibration_units.txt
tests/sample_calibration/cam1.points4cal.dat
tests/sample_calibration/cam2.points4cal.dat
tests/sample_calibration/cam3.points4cal.dat
tests/sample_calibration/cam4.points4cal.dat
tests/sample_calibration/cam5.points4cal.dat
tests/sample_calibration/camera1.Pmat.cal
tests/sample_calibration/camera2.Pmat.cal
tests/sample_calibration/camera3.Pmat.cal
tests/sample_calibration/camera4.Pmat.cal
tests/sample_calibration/camera5.Pmat.cal
tests/sample_calibration/camera_order.txt