.gitignore
LICENSE
README.md
environment.yaml
setup.py
pgx_variant_tools.egg-info/PKG-INFO
pgx_variant_tools.egg-info/SOURCES.txt
pgx_variant_tools.egg-info/dependency_links.txt
pgx_variant_tools.egg-info/entry_points.txt
pgx_variant_tools.egg-info/requires.txt
pgx_variant_tools.egg-info/top_level.txt
tests/__init__.py
tests/context.py
tests/test_alignment.py
tests/test_cli.py
tests/test_mutalyzer.py
tests/test_str.py
tests/test_utils.py
tests/test_variant_calling.py
tests/test_vcftools.py
tests/data/mini.vcf.gz
tests/data/mini.vcf.gz.tbi
tests/data/test.bed
tests/data/test2.bed
variant_tools/__init__.py
variant_tools/alignment.py
variant_tools/cli.py
variant_tools/mutalyzer.py
variant_tools/str_search.py
variant_tools/utils.py
variant_tools/variant_calling.py
variant_tools/vcf_tools.py