MANIFEST.in
README.md
pyproject.toml
setup.py
chAMReDb.egg-info/PKG-INFO
chAMReDb.egg-info/SOURCES.txt
chAMReDb.egg-info/dependency_links.txt
chAMReDb.egg-info/entry_points.txt
chAMReDb.egg-info/requires.txt
chAMReDb.egg-info/top_level.txt
chamredb/__init__.py
chamredb/build_graph_from_mmseqs_data.py
chamredb/query_graph.py
chamredb/run_chamredb.py
chamredb/data/graph.json
chamredb/data/db_fastas/card.nucl.fasta
chamredb/data/db_fastas/card.protein.fasta
chamredb/data/db_fastas/ncbi.nucl.raw.fasta
chamredb/data/db_fastas/ncbi.protein.fasta
chamredb/data/db_fastas/ncbi.protein.raw.fasta
chamredb/data/db_fastas/resfinder.nucl.fasta
chamredb/data/db_fastas/resfinder.protein.fasta
chamredb/data/db_metadata/card.metadata.json
chamredb/data/db_metadata/ncbi.metadata.json
chamredb/data/db_metadata/resfinder.metadata.json
chamredb/data/mmseqs2_results/mmseqs_card_vs_ncbi.rbh.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_ncbi.rbh.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_ncbi.search.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_ncbi.search.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_resfinder.rbh.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_resfinder.rbh.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_resfinder.search.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_card_vs_resfinder.search.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_card.rbh.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_card.rbh.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_card.search.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_card.search.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_resfinder.rbh.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_resfinder.rbh.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_resfinder.search.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_ncbi_vs_resfinder.search.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_card.rbh.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_card.rbh.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_card.search.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_card.search.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_ncbi.rbh.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_ncbi.rbh.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_ncbi.search.sorted.tsv
chamredb/data/mmseqs2_results/mmseqs_resfinder_vs_ncbi.search.tsv
chamredb/functions/__init__.py
chamredb/functions/graph_functions.py
chamredb/functions/graph_visualisation_functions.py
chamredb/functions/utility_functions.py