README.md
setup.py
openpd/__init__.py
openpd/ensemble.py
openpd/forceEncoder.py
openpd/runTest.py
openpd/simulation.py
openpd.egg-info/PKG-INFO
openpd.egg-info/SOURCES.txt
openpd.egg-info/dependency_links.txt
openpd.egg-info/requires.txt
openpd.egg-info/top_level.txt
openpd/core/__init__.py
openpd/core/atom.py
openpd/core/chain.py
openpd/core/peptide.py
openpd/core/system.py
openpd/core/topology.py
openpd/data/pdff/nonbonded/ASN-ASN.npy
openpd/data/pdff/nonbonded/ASN-ASP.npy
openpd/data/pdff/nonbonded/ASN-GLN.npy
openpd/data/pdff/nonbonded/ASN-GLY.npy
openpd/data/pdff/nonbonded/ASN-ILE.npy
openpd/data/pdff/nonbonded/ASN-LEU.npy
openpd/data/pdff/nonbonded/ASN-LYS.npy
openpd/data/pdff/nonbonded/ASN-TRP.npy
openpd/data/pdff/nonbonded/ASN-TYR.npy
openpd/data/pdff/nonbonded/LEU-ASP.npy
openpd/data/pdff/nonbonded/LEU-GLN.npy
openpd/data/pdff/nonbonded/LEU-ILE.npy
openpd/data/pdff/nonbonded/LEU-LEU.npy
openpd/data/pdff/nonbonded/LEU-LYS.npy
openpd/data/pdff/nonbonded/LEU-TRP.npy
openpd/data/pdff/nonbonded/LEU-TYR.npy
openpd/data/pdff/nonbonded/TYR-GLN.npy
openpd/data/pdff/nonbonded/TYR-TYR.npy
openpd/data/pdff/nonbonded/coord.npy
openpd/data/pdff/torsion/ASN-ASP.npy
openpd/data/pdff/torsion/ASN-GLN.npy
openpd/data/pdff/torsion/ASN-GLY.npy
openpd/data/pdff/torsion/ASN-ILE.npy
openpd/data/pdff/torsion/ASN-LEU.npy
openpd/data/pdff/torsion/ASN-LYS.npy
openpd/data/pdff/torsion/ASN-TRP.npy
openpd/data/pdff/torsion/ASN-TYR.npy
openpd/data/pdff/torsion/LEU-ASP.npy
openpd/data/pdff/torsion/LEU-GLN.npy
openpd/data/pdff/torsion/LEU-ILE.npy
openpd/data/pdff/torsion/LEU-LEU.npy
openpd/data/pdff/torsion/LEU-LYS.npy
openpd/data/pdff/torsion/LEU-TRP.npy
openpd/data/pdff/torsion/LEU-TYR.npy
openpd/data/pdff/torsion/TYR-GLN.npy
openpd/data/pdff/torsion/coord.npy
openpd/data/template/ALA.json
openpd/data/template/ARG.json
openpd/data/template/ASN.json
openpd/data/template/ASP.json
openpd/data/template/GLN.json
openpd/data/template/GLY.json
openpd/data/template/ILE.json
openpd/data/template/LEU.json
openpd/data/template/LYS.json
openpd/data/template/PRO.json
openpd/data/template/SER.json
openpd/data/template/TRP.json
openpd/data/template/TYR.json
openpd/dumper/__init__.py
openpd/dumper/pdbDumper.py
openpd/dumper/snapshot.py
openpd/force/__init__.py
openpd/force/force.py
openpd/force/pdffNonBondedForce.py
openpd/force/pdffTorsionForce.py
openpd/force/rigidBondForce.py
openpd/integrator/__init__.py
openpd/integrator/brownianIntegrator.py
openpd/integrator/mcmcIntegrator.py
openpd/loader/__init__.py
openpd/loader/loader.py
openpd/loader/pdbLoader.py
openpd/loader/sequenceLoader.py
openpd/tests/__init__.py
openpd/tests/conftest.py
openpd/tests/test_atom.py
openpd/tests/test_baseDimension.py
openpd/tests/test_chain.py
openpd/tests/test_ensemble.py
openpd/tests/test_force.py
openpd/tests/test_forceEncoder.py
openpd/tests/test_geometry.py
openpd/tests/test_judgement.py
openpd/tests/test_loader.py
openpd/tests/test_locate.py
openpd/tests/test_pdbLoader.py
openpd/tests/test_pdffNonBondedForce.py
openpd/tests/test_pdffNonBondedForceField.py
openpd/tests/test_pdffTorsionForce.py
openpd/tests/test_pdffTorsionForceField.py
openpd/tests/test_peptide.py
openpd/tests/test_quantity.py
openpd/tests/test_rigidBondForce.py
openpd/tests/test_sequenceLoader.py
openpd/tests/test_system.py
openpd/tests/test_topology.py
openpd/tests/test_unique.py
openpd/tests/test_unit.py
openpd/tests/test_unitDefinition.py
openpd/tests/data/exception.pdb
openpd/tests/data/multiChain.pdb
openpd/tests/data/normal.pdb
openpd/tests/data/singleException.json
openpd/tests/data/singleNormal.json
openpd/tests/data/testForceEncoder.json
openpd/tests/data/tripleException.json
openpd/tests/data/tripleNormal.json
openpd/unit/__init__.py
openpd/unit/baseDimension.py
openpd/unit/quantity.py
openpd/unit/unit.py
openpd/unit/unitDefinition.py
openpd/utils/__init__.py
openpd/utils/geometry.py
openpd/utils/judgement.py
openpd/utils/locate.py
openpd/utils/unique.py
openpd/visualizer/__init__.py
openpd/visualizer/systemVisualizer.py