LICENSE
MANIFEST.in
README.md
configExample.json
requirements.txt
setup.py
artwork/microsalt.emf
artwork/microsalt.jpg
artwork/swedac-old.jpg
artwork/swedac.jpg
microSALT/__init__.py
microSALT/cli.py
microSALT.egg-info/PKG-INFO
microSALT.egg-info/SOURCES.txt
microSALT.egg-info/dependency_links.txt
microSALT.egg-info/entry_points.txt
microSALT.egg-info/not-zip-safe
microSALT.egg-info/requires.txt
microSALT.egg-info/top_level.txt
microSALT/server/__init__.py
microSALT/server/app.py
microSALT/server/views.py
microSALT/server/templates/STtracker_page.html
microSALT/server/templates/alignment_page.html
microSALT/server/templates/bootstrap.html
microSALT/server/templates/layout.html
microSALT/server/templates/project_page.html
microSALT/server/templates/start_page.html
microSALT/server/templates/typing_page.html
microSALT/store/__init__.py
microSALT/store/db_manipulator.py
microSALT/store/models.py
microSALT/store/orm_models.py
microSALT/utils/__init__.py
microSALT/utils/job_creator.py
microSALT/utils/referencer.py
microSALT/utils/reporter.py
microSALT/utils/scraper.py
tests/__init__.py
tests/test_commands.py
tests/test_config.py
tests/test_database.py
tests/test_jobcreator.py
tests/test_scraper.py
tests/test_webserver.py
tests/testdata/ACC5551.json
tests/testdata/MIC3109.json
tests/testdata/MIC4107.json
tests/testdata/MIC4109.json
tests/testdata/alignment.stats.cov
tests/testdata/alignment.stats.dup
tests/testdata/alignment.stats.ins
tests/testdata/alignment.stats.map
tests/testdata/alignment.stats.raw
tests/testdata/alignment.stats.ref
tests/testdata/blast_single_loci.txt
tests/testdata/blast_single_resistance.txt
tests/testdata/quast_results.tsv
tests/testdata/sampleinfo_mlst.json
tests/testdata/sampleinfo_samples.json
unique_references/ExPEC.fsa