Metadata-Version: 2.1
Name: spcount
Version: 0.0.6
Summary: Multiple genomes read count
Home-page: https://github.com/shengqh/spcount
Author: Quanhu Sheng
Author-email: quanhu.sheng.1@vumc.org
License: UNKNOWN
Download-URL: https://github.com/shengqh/spcount/archive/v0.0.6.tar.gz
Description: # spcount
        
        This package is used to map short reads to multiple genomes with perfect match and report only once for each category.
        
        # Prerequisites
        
        Install bowtie
        
        ```
        BOWTIE_VERSION="1.2.3"
        cd ~; \
          wget https://github.com/BenLangmead/bowtie/releases/download/v${BOWTIE_VERSION}/bowtie-${BOWTIE_VERSION}-linux-x86_64.zip; \
          unzip bowtie-${BOWTIE_VERSION}-linux-x86_64.zip; \
          rm bowtie-${BOWTIE_VERSION}-linux-x86_64.zip
        export PATH=$PATH:~/bowtie-${BOWTIE_VERSION}-linux-x86_64
        ```
        
        # Installation
        
        Install python main package
        
        ```
        pip install spcount
        ```
        
        Or you can install from github directly
        
        ```
        pip install git+git://github.com/shengqh/spcount.git
        ```
        
        
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.6
Description-Content-Type: text/markdown
