LICENSE
MANIFEST.in
README.md
cmsip_flowchart.png
setup.py
cmsip/__init__.py
cmsip/cmsip.py
cmsip.egg-info/PKG-INFO
cmsip.egg-info/SOURCES.txt
cmsip.egg-info/dependency_links.txt
cmsip.egg-info/entry_points.txt
cmsip.egg-info/not-zip-safe
cmsip.egg-info/requires.txt
cmsip.egg-info/top_level.txt
cmsip/R/chisq.R
cmsip/R/gtest.R
cmsip/R/nbtest.R
cmsip/R/nbtest_sf.R
cmsip/R/p.adj.R
cmsip/R/ttest.R
cmsip/perl/removeCommonRead.pl
config/config_bam.yaml
config/config_fastq.yaml
example/config.sh
example/fasta.sh
example/run.sh
example/bamfile/I1.bam
example/bamfile/I1_spk.bam
example/bamfile/I2.bam
example/bamfile/I2_spk.bam
example/bamfile/I3.bam
example/bamfile/I3_spk.bam
example/bamfile/T1.bam
example/bamfile/T1_spk.bam
example/bamfile/T2.bam
example/bamfile/T2_spk.bam
example/bamfile/W1.bam
example/bamfile/W1_spk.bam
example/bamfile/W2.bam
example/bamfile/W2_spk.bam