MANIFEST.in
README.md
environment.yml
pyproject.toml
requirements.txt
setup.py
bio_embeddings/__init__.py
bio_embeddings.egg-info/PKG-INFO
bio_embeddings.egg-info/SOURCES.txt
bio_embeddings.egg-info/dependency_links.txt
bio_embeddings.egg-info/requires.txt
bio_embeddings.egg-info/top_level.txt
bio_embeddings/embed/EmbedderInterface.py
bio_embeddings/embed/__init__.py
bio_embeddings/embed/pipeline.py
bio_embeddings/embed/albert/AlbertEmbedder.py
bio_embeddings/embed/albert/__init__.py
bio_embeddings/embed/fasttext/FastTextEmbedder.py
bio_embeddings/embed/fasttext/__init__.py
bio_embeddings/embed/glove/GloveEmbedder.py
bio_embeddings/embed/glove/__init__.py
bio_embeddings/embed/seqvec/SeqVecEmbedder.py
bio_embeddings/embed/seqvec/__init__.py
bio_embeddings/embed/transformerxl/TransformerXL.py
bio_embeddings/embed/transformerxl/__init__.py
bio_embeddings/embed/transformerxl/mem_transformer.py
bio_embeddings/embed/transformerxl/utils/__init__.py
bio_embeddings/embed/transformerxl/utils/adaptive_softmax.py
bio_embeddings/embed/transformerxl/utils/data_parallel.py
bio_embeddings/embed/transformerxl/utils/exp_utils.py
bio_embeddings/embed/transformerxl/utils/log_uniform_sampler.py
bio_embeddings/embed/transformerxl/utils/proj_adaptive_softmax.py
bio_embeddings/embed/transformerxl/utils/vocabulary.py
bio_embeddings/embed/word2vec/Word2VecEmbedder.py
bio_embeddings/embed/word2vec/__init__.py
bio_embeddings/extract_features/FeatureExtractorInterface.py
bio_embeddings/extract_features/__init__.py
bio_embeddings/extract_features/features/Disorder.py
bio_embeddings/extract_features/features/FeatureInterface.py
bio_embeddings/extract_features/features/FeaturesCollection.py
bio_embeddings/extract_features/features/Location.py
bio_embeddings/extract_features/features/Membrane.py
bio_embeddings/extract_features/features/SecondaryStructure.py
bio_embeddings/extract_features/features/__init__.py
bio_embeddings/extract_features/seqvec/SeqVecFeatureExtractor.py
bio_embeddings/extract_features/seqvec/__init__.py
bio_embeddings/extract_features/seqvec/feature_inference_models.py
bio_embeddings/project/__init__.py
bio_embeddings/project/pipeline.py
bio_embeddings/project/tsne.py
bio_embeddings/project/umap.py
bio_embeddings/utilities/__init__.py
bio_embeddings/utilities/bio_embeddings.py
bio_embeddings/utilities/config.py
bio_embeddings/utilities/defaults.yml
bio_embeddings/utilities/exceptions.py
bio_embeddings/utilities/helpers.py
bio_embeddings/utilities/logging.py
bio_embeddings/utilities/pipeline.py
bio_embeddings/utilities/remote_file_retriever.py
bio_embeddings/utilities/filemanagers/FileManagerInterface.py
bio_embeddings/utilities/filemanagers/FileSystemFileManager.py
bio_embeddings/utilities/filemanagers/__init__.py
bio_embeddings/visualize/__init__.py
bio_embeddings/visualize/pipeline.py
bio_embeddings/visualize/plotly_plots.py
tests/__init__.py
tests/test_bio_embeddings_simple.py