LICENSE
README.md
setup.cfg
setup.py
midas2/__init__.py
midas2/__main__.py
midas2.egg-info/PKG-INFO
midas2.egg-info/SOURCES.txt
midas2.egg-info/dependency_links.txt
midas2.egg-info/entry_points.txt
midas2.egg-info/not-zip-safe
midas2.egg-info/requires.txt
midas2.egg-info/top_level.txt
midas2/common/__init__.py
midas2/common/argparser.py
midas2/common/bowtie2.py
midas2/common/snvs.py
midas2/common/utilities.py
midas2/common/utils.py
midas2/models/__init__.py
midas2/models/midasdb.py
midas2/models/sample.py
midas2/models/samplepool.py
midas2/models/species.py
midas2/models/uhgg.py
midas2/params/__init__.py
midas2/params/batch.py
midas2/params/inputs.py
midas2/params/outputs.py
midas2/params/schemas.py
midas2/subcommands/__init__.py
midas2/subcommands/annotate_genome.py
midas2/subcommands/aws_batch_init.py
midas2/subcommands/aws_batch_submit.py
midas2/subcommands/build_bowtie2db.py
midas2/subcommands/build_midasdb.py
midas2/subcommands/build_pangenome.py
midas2/subcommands/compute_chunks.py
midas2/subcommands/database.py
midas2/subcommands/example_subcommand.py
midas2/subcommands/import_uhgg.py
midas2/subcommands/infer_markers.py
midas2/subcommands/init.py
midas2/subcommands/merge_genes.py
midas2/subcommands/merge_snps.py
midas2/subcommands/merge_species.py
midas2/subcommands/run_genes.py
midas2/subcommands/run_snps.py
midas2/subcommands/run_species.py