Metadata-Version: 1.1
Name: gmArrayFilter
Version: 1.0.0
Summary: A python package to filter SNP array data
Home-page: https://gitee.com/brightrock/plant-gmap-array
Author: lx Gui
Author-email: guilixuan@gmail.com
License: MIT
Description: gmArrayFilter: Axiom chip data filter and visualization
        ========================================================
        
        
        Usage
        -----------
        
        split merged chip file
        
        
            $ gmArray filter array-split \
                array.file split.dir --prefix prefix
        
        
        filter chip data
        
            $ gmArray filter array-filer-web \
                --array-dir uploads/project/605b06231ac54fdcc821c83f \
                --array-dir public/publicData/array \
                --genome-dir /home/kent/data/gmap/gmapdb/data \
                --out-dir public/score/605b06431ac54fdcc821c845 \
                --array-annotation-dir public/array \
                --options '{"mutant":["mutant"],"wild":["wild"],"mutant_parent":[],"wild_parent":[],"array":"660K","child_max_na":0,"parent_max_na":1,"mutant_gt":"homozygous","wild_gt":"heterozygous","mutant_parent_gt":"homozygous","wild_parent_gt":"homozygous","strict":0,"density_window":1000000,"density_step":500000,"genomes":["CSv1.0","CSv2.0"]}'
        
Keywords: bioinformatics,NGS,Reseq,SNP
Platform: all
Classifier: Intended Audience :: Developers
Classifier: Operating System :: OS Independent
Classifier: Natural Language :: Chinese (Simplified)
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
