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.gitignore
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AUTHORS.rst
Contributing.rst
LICENSE.txt
README.rst
requirements.txt
setup.py
tox.ini
binder/postBuild
bluegraph/__init__.py
bluegraph/exceptions.py
bluegraph/version.py
bluegraph.egg-info/PKG-INFO
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bluegraph.egg-info/dependency_links.txt
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bluegraph/backends/stellargraph/__init__.py
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bluegraph/backends/stellargraph/embed/__init__.py
bluegraph/backends/stellargraph/embed/embedders.py
bluegraph/backends/stellargraph/embed/ml_utils.py
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bluegraph/core/io.py
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bluegraph/core/analyse/__init__.py
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bluegraph/downstream/__init__.py
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bluegraph/preprocess/__init__.py
bluegraph/preprocess/encoders.py
bluegraph/preprocess/generators.py
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cord19kg/README.rst
cord19kg/__init__.py
cord19kg/utils.py
cord19kg/apps/__init__.py
cord19kg/apps/app_utils.py
cord19kg/apps/components.py
cord19kg/apps/curation_app.py
cord19kg/apps/resources.py
cord19kg/apps/topic_widgets.py
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cord19kg/examples/generate_10000_network.py
cord19kg/examples/config/data-download-nexus.yml
cord19kg/examples/config/file-to-resource-mapping.hjson
cord19kg/examples/data/Glucose_risk_20_papers.csv
cord19kg/examples/data/LICENSE.txt
cord19kg/examples/data/NCIT_type_mapping.json
cord19kg/examples/figures/curation_app.png
cord19kg/examples/figures/graph_vis_app.png
cord19kg/examples/models/neuroshapes_context.json
cord19kg/examples/notebooks/Co-occurrence analysis tutorial.ipynb
cord19kg/examples/notebooks/Glucose is a risk facor for COVID-19 (3000 papers).ipynb
cord19kg/examples/notebooks/Nexus-hosted co-occurrence analysis tutorail.ipynb
cord19kg/examples/notebooks/figures/curation_app.png
cord19kg/examples/notebooks/figures/graph_vis_app.png
cord19kg/examples/notebooks/figures/nexus_log_in.png
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docs/Makefile
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docs/source/bluegraph-api.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/cord19kg-api.rst
docs/source/cord19kg.rst
docs/source/index.rst
docs/source/releasesfile.rst
docs/source/services_api.rst
docs/source/assets/1_download.png
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docs/source/examples/figures/BBP_Blue_Graph_banner.jpg
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docs/source/modules/bluegraph_core_io.rst
docs/source/modules/cord19kg_utils.rst
docs/source/modules/curation_app_source.rst
docs/source/modules/topic_apps_source.rst
docs/source/modules/visualization_app_source.rst
docs/source/packages/bluegraph_backends_gensim.rst
docs/source/packages/bluegraph_backends_graph_tool.rst
docs/source/packages/bluegraph_backends_neo4j.rst
docs/source/packages/bluegraph_backends_networkx.rst
docs/source/packages/bluegraph_backends_ref.rst
docs/source/packages/bluegraph_backends_stellargraph.rst
docs/source/packages/bluegraph_core_analyse.rst
docs/source/packages/bluegraph_core_embed.rst
docs/source/packages/bluegraph_core_ref.rst
docs/source/packages/bluegraph_downstream_ref.rst
docs/source/packages/bluegraph_preprocess_ref.rst
docs/source/releases/v0.1.1.rst
docs/source/releases/v0.1.2.rst
docs/source/releases/v0.1.3.rst
docs/source/tutorials/index.rst
docs/source/tutorials/bluegraph_tutorials/embedding_tutorial.rst
docs/source/tutorials/bluegraph_tutorials/getting_started_bluegraph.rst
docs/source/tutorials/bluegraph_tutorials/intro_to_pgframes.rst
docs/source/tutorials/bluegraph_tutorials/literature.rst
docs/source/tutorials/bluegraph_tutorials/nasa.rst
docs/source/tutorials/bluegraph_tutorials/pipelines_tutorial.rst
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docs/source/tutorials/cord19kg_tutorials/getting_started_cord19kg.rst
docs/source/tutorials/cord19kg_tutorials/visualization_app_guide.rst
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examples/LICENSE.txt
examples/data/LICENSE.txt
examples/data/entity_types_defs.csv
examples/data/labeled_entity_occurrence.csv
examples/data/literature_NER_example.csv
examples/data/test_cooccurrence_graph.json
examples/figures/BBP_Blue_Graph_banner.jpg
examples/figures/README_BlueGraph_components.png
examples/notebooks/Create and run embedding pipelines.ipynb
examples/notebooks/Embedding and downstream tasks tutorial.ipynb
examples/notebooks/Literature exploration (PGFrames + in-memory analytics tutorial).ipynb
examples/notebooks/NASA keywords (PGFrames + Neo4j analytics tutorial).ipynb
examples/notebooks/PGFrames and sematic encoding tutorial.ipynb
examples/notebooks/Push embedding pipelines into Nexus.ipynb
examples/notebooks/figures/literature/covid_19_comorbidities.png
examples/notebooks/figures/literature/full_network.png
examples/notebooks/figures/literature/immunity.png
examples/notebooks/figures/literature/path_graph_example.png
examples/notebooks/figures/literature/tree.png
examples/notebooks/figures/literature/tree_covid-19.png
examples/notebooks/figures/literature/virus.png
examples/notebooks/figures/nasa/celestial_body_cluster.png
examples/notebooks/figures/nasa/celestial_body_cluster_zoom.png
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examples/notebooks/figures/nasa/earth_science.png
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services/embedder/Dockerfile
services/embedder/README.rst
services/embedder/api.yaml
services/embedder/app.py
services/embedder/environment.yml
services/embedder/service_requirements.txt
services/embedder/configs/app_config.py
services/embedder/configs/forge_configs/file-to-resource-mapping.hjson
services/embedder/configs/forge_configs/forge-config.yml
services/embedder/downloads/Attri2vec_test_model.zip
services/embedder/downloads/Cord-19-NCIT-linking.zip
services/embedder/examples/data/cooccurrence_graph.json
services/embedder/examples/notebooks/Embedder API for NCIt term embedding.ipynb
services/embedder/examples/notebooks/Embedder API for node embedding.ipynb
tests/__init__.py
tests/conftest.py
tests/test_factories.py
tests/test_ontology.ttl
tests/zachari_karate_club.json
tests/analyse/test_communities.py
tests/analyse/test_metrics.py
tests/analyse/test_paths.py
tests/downstream/test_link_prediction.py
tests/downstream/test_node_classification.py
tests/downstream/test_pipelines.py
tests/downstream/test_similarity.py
tests/embed/test_node_embedding.py
tests/io/test_pgframes.py
tests/io/test_processors.py
tests/io/test_utils.py
tests/preprocess/test_co_occurrence_generators.py
tests/preprocess/test_preprocess_utils.py
tests/preprocess/test_semantic_pg_encoder.py