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AUTHORS.rst
CONTRIBUTING.rst
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tox.ini
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stlearn/_compat.py
stlearn/_settings.py
stlearn/add.py
stlearn/cli.py
stlearn/em.py
stlearn/gui.py
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stlearn/pl.py
stlearn/pp.py
stlearn/read.py
stlearn/spatial.py
stlearn/tl.py
stlearn/utils.py
stlearn/view.py
stlearn.egg-info/PKG-INFO
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stlearn.egg-info/not-zip-safe
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stlearn/image_preprocessing/image_tiling.py
stlearn/image_preprocessing/model_zoo.py
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stlearn/plotting/trajectory/tree_plot.py
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stlearn/preprocessing/__init__.py
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stlearn/reads/__init__.py
stlearn/reads/read.py
stlearn/spatials/__init__.py
stlearn/spatials/clustering/__init__.py
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stlearn/spatials/trajectory/__init__.py
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stlearn/tools/clustering/__init__.py
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stlearn/tools/enrichment_analysis/__init__.py
stlearn/tools/enrichment_analysis/enrichr.py
stlearn/tools/enrichment_analysis/microenv.py
stlearn/tools/microenv/__init__.py
stlearn/tools/microenv/SpatialDE/__init__.py
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stlearn/tools/microenv/SpatialDE/anndata.py
stlearn/tools/microenv/SpatialDE/base.py
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stlearn/tools/microenv/cci/__init__.py
stlearn/tools/microenv/cci/base.py
stlearn/tools/microenv/cci/het.py
stlearn/tools/microenv/cci/merge.py
stlearn/views/__init__.py
stlearn/views/microenv_view.py
stlearn/views/pts_view.py
stlearn/wrapper/__init__.py
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tests/__init__.py
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tutorials/Pseudo-space-time-tutorial.ipynb
tutorials/README.md
tutorials/Read_MERFISH.ipynb
tutorials/Read_seqfish.ipynb
tutorials/Read_slideseq.ipynb
tutorials/Working-with-Old-Spatial-Transcriptomics-data.ipynb
tutorials/cci.ipynb
tutorials/means.txt
tutorials/predictions.csv
tutorials/spatialDE.ipynb
tutorials/stSME_clustering.ipynb
tutorials/stSME_comparison.ipynb